MCP Radar
MCP Server

Claidex MCP

com.claidex/failure-intelligence
Healthcare Science & Engineering Search & Research Public & reachable MCP 2026-07-28

What this MCP does

Searches biomedical claims, clinical trials, drug databases, adverse-event data, literature, preprints, and failure-risk analyses.

Capabilities

Tools

24 tools
claidex_capabilities
Claidex MCP Capabilities
Return the Claidex MCP feature map, configured storage/model providers, safety controls, resources, prompts, and tool counts.
Input schema 
{'type': 'object', '$schema': 'https://json-schema.org/draft/2020-12/schema', 'properties': {}, 'additionalProperties': False}
claidex_claim_risk_matrix
Claidex Claim Risk Matrix
Search claims and summarize MRS bands, trial phases, failure archetypes, and high-risk programs for rapid diligence.
Input schema 
{'type': 'object', '$schema': 'https://json-schema.org/draft/2020-12/schema', 'required': ['query', 'limit'], 'properties': {'limit': {'type': 'integer', 'default': 10, 'maximum': 20, 'minimum': 1}, 'query': {'type': 'string', 'minLength': 1, 'description': 'Drug, target, disease, sponsor, or failure archetype.'}}, 'additionalProperties': False}
claidex_health_snapshot
Claidex Health Snapshot
Return Sentinel metrics, coverage, graph counts, recent automation runs, MRS bands, and preprint-watch summaries.
Input schema 
{'type': 'object', '$schema': 'https://json-schema.org/draft/2020-12/schema', 'properties': {}, 'additionalProperties': False}
claidex_research_prompt
Claidex Research Prompt
Compose a rigorous, reusable investigation prompt that tells an MCP client which Claidex tools and resources to use.
Input schema 
{'type': 'object', '$schema': 'https://json-schema.org/draft/2020-12/schema', 'required': ['objective', 'risk_tolerance'], 'properties': {'disease': {'type': 'string', 'description': 'Optional disease area.'}, 'objective': {'type': 'string', 'minLength': 1, 'description': 'The investigation objective to turn into a reusable MCP prompt.'}, 'target_gene': {'type': 'string', 'description': 'Optional HGNC target symbol.'}, 'risk_tolerance': {'enum': ['low', 'medium', 'high'], 'type': 'string', 'default': 'medium'}}, 'additionalProperties': False}
claidex_tool_catalog
Claidex Tool Catalog
Return the complete MCP tool catalog, optionally including full input schemas and filtering native versus agent-backed tools.
Input schema 
{'type': 'object', '$schema': 'https://json-schema.org/draft/2020-12/schema', 'required': ['include_schemas', 'source'], 'properties': {'source': {'enum': ['all', 'claidex-agent', 'mcp-native'], 'type': 'string', 'default': 'all'}, 'include_schemas': {'type': 'boolean', 'default': False, 'description': 'Include full JSON Schemas in the catalog.'}}, 'additionalProperties': False}
consult_specialist_model
Consult Specialist Model
Ask a specialist Gateway model for code, database/tool-calling, statistics, literature, preprint, or mechanistic synthesis support. Use for hard subproblems, second opinions, code generation/review, or complex synthesis.
Input schema 
{'type': 'object', '$schema': 'https://json-schema.org/draft/2020-12/schema', 'required': ['task_type', 'prompt'], 'properties': {'prompt': {'type': 'string', 'maxLength': 6000, 'minLength': 1, 'description': 'Focused task for the specialist model.'}, 'context': {'type': 'string', 'maxLength': 10000, 'description': 'Relevant context, snippets, or data. Do not include secrets.'}, 'task_type': {'enum': ['code', 'database', 'reasoning', 'statistics', 'research', 'literature', 'synthesis', 'preprint', 'general'], 'type': 'string', 'description': 'Specialist routing target.'}}, 'additionalProperties': False}
fetch
Fetch Claidex Result
Fetch a specific result returned by search. This compatibility tool supports OpenAI and ChatGPT remote MCP retrieval flows.
Input schema 
{'type': 'object', '$schema': 'https://json-schema.org/draft/2020-12/schema', 'required': ['id'], 'properties': {'id': {'type': 'string', 'minLength': 1, 'description': 'Result id returned by the search tool.'}}, 'additionalProperties': False}
fetch_research_url
Fetch Research Url
Fetch a public HTTPS research URL, JSON API response, package metadata endpoint, documentation page, or dataset preview. Blocks private/internal hosts and truncates large responses.
Input schema 
{'type': 'object', '$schema': 'https://json-schema.org/draft/2020-12/schema', 'required': ['url', 'max_chars'], 'properties': {'url': {'type': 'string', 'format': 'uri', 'description': 'Public HTTPS URL to fetch.'}, 'max_chars': {'type': 'number', 'default': 8000, 'maximum': 20000, 'minimum': 500}}, 'additionalProperties': False}
get_claim_content
Get Claim Content
Retrieve the complete text content of a specific Claidex Claim by its slug. Use this when you need to read the full post-mortem analysis, including hypothesis, failure mechanism, and prevention analysis.
Input schema 
{'type': 'object', '$schema': 'https://json-schema.org/draft/2020-12/schema', 'required': ['slug'], 'properties': {'slug': {'type': 'string', 'minLength': 1, 'description': 'The Claidex claim slug, e.g. exicorilant-mcrpc-gr-bypass-fourth-failure'}}, 'additionalProperties': False}
query_chembl
Query Chembl
Look up a drug or compound in ChEMBL. Returns mechanism of action, primary target, ChEMBL ID, max development phase, molecular type, and synonyms.
Input schema 
{'type': 'object', '$schema': 'https://json-schema.org/draft/2020-12/schema', 'required': ['drug_name'], 'properties': {'drug_name': {'type': 'string', 'minLength': 1, 'description': 'Drug or compound name'}}, 'additionalProperties': False}
query_clinicaltrials
Query Clinicaltrials
Search ClinicalTrials.gov for clinical trials. Can search by drug name, condition, target, or NCT ID. Returns trial status, phase, sponsor, primary endpoints, and why_stopped if terminated.
Input schema 
{'type': 'object', '$schema': 'https://json-schema.org/draft/2020-12/schema', 'required': ['query', 'status', 'phase', 'max_results'], 'properties': {'phase': {'enum': ['PHASE1', 'PHASE2', 'PHASE3', 'PHASE4', 'any'], 'type': 'string', 'default': 'any'}, 'query': {'type': 'string', 'minLength': 1, 'description': 'Search term: drug name, condition, NCT ID, or target'}, 'status': {'enum': ['RECRUITING', 'ACTIVE_NOT_RECRUITING', 'TERMINATED', 'WITHDRAWN', 'COMPLETED', 'any'], 'type': 'string', 'default': 'any'}, 'max_results': {'type': 'number', 'default': 5, 'maximum': 10, 'minimum': 1}}, 'additionalProperties': False}
query_failure_graph
Query Failure Graph
Query the Claidex failure graph for a specific gene target. Returns the Mechanism Risk Score (MRS), failure counts by phase and archetype, and all related claim slugs.
Input schema 
{'type': 'object', '$schema': 'https://json-schema.org/draft/2020-12/schema', 'required': ['target_gene'], 'properties': {'target_gene': {'type': 'string', 'minLength': 1, 'description': 'HGNC gene symbol, e.g. PIK3CA, KRAS, EGFR'}}, 'additionalProperties': False}
query_openfda
Query Openfda
Query the FDA FAERS database for adverse event signals for a drug. Returns top adverse event terms, serious case count, and death count.
Input schema 
{'type': 'object', '$schema': 'https://json-schema.org/draft/2020-12/schema', 'required': ['drug_name', 'max_results'], 'properties': {'drug_name': {'type': 'string', 'minLength': 1, 'description': 'Drug name as it appears in FAERS'}, 'max_results': {'type': 'number', 'default': 10, 'maximum': 20, 'minimum': 1}}, 'additionalProperties': False}
query_opentargets
Query Opentargets
Query Open Targets for target-disease association evidence. Returns genetic evidence score, clinical evidence, known drugs, tractability, and safety liabilities for a gene-disease pair.
Input schema 
{'type': 'object', '$schema': 'https://json-schema.org/draft/2020-12/schema', 'required': ['target_gene', 'disease_term'], 'properties': {'target_gene': {'type': 'string', 'minLength': 1, 'description': 'HGNC gene symbol'}, 'disease_term': {'type': 'string', 'minLength': 1, 'description': 'Disease name or EFO term'}}, 'additionalProperties': False}
query_package_registry
Query Package Registry
Look up package metadata from npm or PyPI before recommending code, analysis packages, API clients, or dataset tooling.
Input schema 
{'type': 'object', '$schema': 'https://json-schema.org/draft/2020-12/schema', 'required': ['ecosystem', 'package_name'], 'properties': {'ecosystem': {'enum': ['npm', 'pypi'], 'type': 'string', 'description': 'Package registry to query.'}, 'package_name': {'type': 'string', 'maxLength': 120, 'minLength': 1, 'description': 'Package name.'}}, 'additionalProperties': False}
rank_documents_by_embedding
Rank Documents By Embedding
Embed a query and candidate documents, then rank documents by cosine similarity. Use for semantic matching, retrieval checks, clustering triage, and lightweight RAG over user-provided passages.
Input schema 
{'type': 'object', '$schema': 'https://json-schema.org/draft/2020-12/schema', 'required': ['query', 'documents', 'top_k'], 'properties': {'query': {'type': 'string', 'maxLength': 4000, 'minLength': 1}, 'top_k': {'type': 'number', 'default': 10, 'maximum': 20, 'minimum': 1}, 'documents': {'type': 'array', 'items': {'type': 'string', 'maxLength': 8000, 'minLength': 1}, 'maxItems': 30, 'minItems': 1}}, 'additionalProperties': False}
rerank_documents
Rerank Documents
Rerank candidate documents/passages against a query using a dedicated reranking model. Use after retrieval/search when exact relevance ordering matters.
Input schema 
{'type': 'object', '$schema': 'https://json-schema.org/draft/2020-12/schema', 'required': ['query', 'documents', 'top_n'], 'properties': {'query': {'type': 'string', 'maxLength': 4000, 'minLength': 1}, 'top_n': {'type': 'number', 'default': 10, 'maximum': 20, 'minimum': 1}, 'documents': {'type': 'array', 'items': {'type': 'string', 'maxLength': 8000, 'minLength': 1}, 'maxItems': 50, 'minItems': 1}}, 'additionalProperties': False}
run_computation
Run Computation
Evaluate deterministic mathematical expressions with optional variables. Use for algebra, matrices, vectors, transformations, descriptive numerical checks, and reproducible calculations. Does not execute arbitrary JavaScript or install packages.
Input schema 
{'type': 'object', '$schema': 'https://json-schema.org/draft/2020-12/schema', 'required': ['expression', 'variables'], 'properties': {'variables': {'type': 'object', 'default': {}, 'description': 'Variables available to the expression. Values must be numbers, strings, vectors, or matrices.', 'propertyNames': {'type': 'string'}, 'additionalProperties': {'anyOf': [{'type': 'number'}, {'type': 'string'}, {'type': 'array', 'items': {'type': 'number'}}, {'type': 'array', 'items': {'type': 'array', 'items': {'type': 'number'}}}]}}, 'expression': {'type': 'string', 'maxLength': 4000, 'minLength': 1, 'description': 'MathJS expression, e.g. mean(values), std(values), multiply(A, b), inv(A).'}}, 'additionalProperties': False}
run_statistical_analysis
Run Statistical Analysis
Run a statistical analysis computation. Supports: Wilson confidence intervals, binomial proportions, phase transition success rates, power calculations, Bayesian posterior estimates, descriptive statistics, and two-proportion comparisons. Returns computed values, interpretation, and LaTeX formula.
Input schema 
{'type': 'object', '$schema': 'https://json-schema.org/draft/2020-12/schema', 'required': ['analysis_type', 'inputs'], 'properties': {'inputs': {'type': 'object', 'description': 'Named input parameters. wilson_ci: {successes, n, confidence}. phase_transition_rate: {phase, indication, n_succeeded, n_total}. power_calculation: {n, effect_size, alpha}. bayesian_posterior: {prior_success_rate, n_observed, n_success, prior_strength?}. descriptive_stats: {values: number[]}. failure_rate_comparison: {a_success, a_n, b_success, b_n}.', 'propertyNames': {'type': 'string'}, 'additionalProperties': {'anyOf': [{'type': 'number'}, {'type': 'string'}, {'type': 'array', 'items': {'type': 'number'}}]}}, 'context': {'type': 'string', 'description': 'Optional context about what this analysis is for'}, 'analysis_type': {'enum': ['wilson_ci', 'phase_transition_rate', 'power_calculation', 'bayesian_posterior', 'descriptive_stats', 'failure_rate_comparison'], 'type': 'string'}}, 'additionalProperties': False}
search
Search Claidex
Search Claidex failure claims and preprint flags. This compatibility tool returns citation-ready results for OpenAI and ChatGPT remote MCP flows.
Input schema 
{'type': 'object', '$schema': 'https://json-schema.org/draft/2020-12/schema', 'required': ['query', 'limit'], 'properties': {'limit': {'type': 'integer', 'default': 8, 'maximum': 10, 'minimum': 1}, 'query': {'type': 'string', 'minLength': 1, 'description': 'Biomedical failure intelligence query.'}}, 'additionalProperties': False}
search_claims
Search Claims
Search the Claidex failure database for post-mortems matching a drug name, gene target, disease, failure archetype, or sponsor. Returns matching claims with title, slug, drug, target, disease, phase, failure archetype, Open Targets score, and MRS score.
Input schema 
{'type': 'object', '$schema': 'https://json-schema.org/draft/2020-12/schema', 'required': ['query', 'category', 'failure_archetype', 'limit'], 'properties': {'limit': {'type': 'number', 'default': 10, 'maximum': 20, 'minimum': 1}, 'query': {'type': 'string', 'minLength': 1, 'description': 'Search term: drug name, gene symbol, disease, or failure archetype'}, 'category': {'enum': ['Oncology', 'Cardiology', 'Neurology', 'Immunology', 'Infectious Disease', 'Metabolic', 'Rare Disease', 'Other', 'any'], 'type': 'string', 'default': 'any'}, 'failure_archetype': {'enum': ['efficacy_failure', 'safety_signal', 'enrollment_collapse', 'sponsor_decision', 'strategic_reprioritization', 'translational_mismatch', 'biomarker_failure', 'any'], 'type': 'string', 'default': 'any'}}, 'additionalProperties': False}
search_preprint_flags
Search Preprint Flags
Search the Claidex Preprint Watch database for bioRxiv preprints flagged as contradicting the clinical failure record. Search by target gene, disease, or preprint title.
Input schema 
{'type': 'object', '$schema': 'https://json-schema.org/draft/2020-12/schema', 'required': ['query', 'severity'], 'properties': {'query': {'type': 'string', 'minLength': 1, 'description': 'Search term: gene symbol, disease, or preprint title fragment'}, 'severity': {'enum': ['STRONG', 'MODERATE', 'MILD', 'any'], 'type': 'string', 'default': 'any'}}, 'additionalProperties': False}
search_pubmed
Search Pubmed
Search PubMed for biomedical literature. Returns title, authors, journal, year, DOI, abstract, and PMID for each result.
Input schema 
{'type': 'object', '$schema': 'https://json-schema.org/draft/2020-12/schema', 'required': ['query', 'max_results'], 'properties': {'query': {'type': 'string', 'minLength': 1, 'description': 'PubMed search query'}, 'max_results': {'type': 'number', 'default': 5, 'maximum': 10, 'minimum': 1}}, 'additionalProperties': False}
web_search
Web Search
Search the web for recent news, investor commentary, analyst notes, press releases, and conference coverage about drugs, clinical trials, or biomedical mechanisms.
Input schema 
{'type': 'object', '$schema': 'https://json-schema.org/draft/2020-12/schema', 'required': ['query', 'focus'], 'properties': {'focus': {'enum': ['news', 'academic', 'investor', 'any'], 'type': 'string', 'default': 'any'}, 'query': {'type': 'string', 'minLength': 1, 'description': 'Search query'}}, 'additionalProperties': False}
History

Recent tool changes

Added
web_search
Sept. 25, 2026, 2:46 a.m.
Added
search_pubmed
Sept. 25, 2026, 2:46 a.m.
Added
search_preprint_flags
Sept. 25, 2026, 2:46 a.m.
Added
search_claims
Sept. 25, 2026, 2:46 a.m.
Added
search
Sept. 25, 2026, 2:46 a.m.
Added
run_statistical_analysis
Sept. 25, 2026, 2:46 a.m.
Added
run_computation
Sept. 25, 2026, 2:46 a.m.
Added
rerank_documents
Sept. 25, 2026, 2:46 a.m.
Added
rank_documents_by_embedding
Sept. 25, 2026, 2:46 a.m.
Added
query_package_registry
Sept. 25, 2026, 2:46 a.m.
Added
query_opentargets
Sept. 25, 2026, 2:46 a.m.
Added
query_openfda
Sept. 25, 2026, 2:46 a.m.
Added
query_failure_graph
Sept. 25, 2026, 2:46 a.m.
Added
query_clinicaltrials
Sept. 25, 2026, 2:46 a.m.
Added
query_chembl
Sept. 25, 2026, 2:46 a.m.
Added
get_claim_content
Sept. 25, 2026, 2:46 a.m.
Added
fetch_research_url
Sept. 25, 2026, 2:46 a.m.
Added
fetch
Sept. 25, 2026, 2:46 a.m.
Added
consult_specialist_model
Sept. 25, 2026, 2:46 a.m.
Added
claidex_tool_catalog
Sept. 25, 2026, 2:46 a.m.
Added
claidex_research_prompt
Sept. 25, 2026, 2:46 a.m.
Added
claidex_health_snapshot
Sept. 25, 2026, 2:46 a.m.
Added
claidex_claim_risk_matrix
Sept. 25, 2026, 2:46 a.m.
Added
claidex_capabilities
Sept. 25, 2026, 2:46 a.m.
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