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Oliver's mTOR Atlas

io.github.open-mtor-atlas/mtor-atlas
과학 및 엔지니어링 검색 및 리서치 공개 · 연결 가능 MCP 2025-11-25

이 MCP로 할 수 있는 일

Provides an evidence-labelled knowledge base of mTOR entities, pathway relations, studies, contradictions, and open research questions.

기능

도구

11 도구
atlas_about
About the Atlas
Dataset version, corpus snapshot date, counts, evidence-code legend and how to cite the dataset.
읽기 전용 멱등성
입력 스키마 
{'type': 'object', 'properties': {}}
evidence_between
Evidence between two entities
Direct curated relations between two entities (either direction) with full cards for the supporting and conflicting studies. Answers questions such as "what is the evidence that A acts on B?".
읽기 전용 멱등성
입력 스키마 
{'type': 'object', '$schema': 'http://json-schema.org/draft-07/schema#', 'required': ['a', 'b'], 'properties': {'a': {'type': 'string'}, 'b': {'type': 'string'}}}
find_contradictions
Find contested claims
Relations the Atlas marks as contested or that carry conflicting studies, with both sides of the evidence. Optionally limited to one entity.
읽기 전용 멱등성
입력 스키마 
{'type': 'object', '$schema': 'http://json-schema.org/draft-07/schema#', 'properties': {'limit': {'type': 'integer', 'default': 20, 'maximum': 50, 'minimum': 1}, 'entity': {'type': 'string'}}}
find_relations
Find pathway relations
Signed, evidence-linked pathway relations (claims such as "Rheb activates mTORC1"). Filter by an entity on either end, by source/target, effect, contested status or minimum strength of the best supporting evidence.
읽기 전용 멱등성
입력 스키마 
{'type': 'object', '$schema': 'http://json-schema.org/draft-07/schema#', 'properties': {'limit': {'type': 'integer', 'default': 20, 'maximum': 50, 'minimum': 1}, 'effect': {'enum': ['activates', 'inhibits', 'binds', 'recruits', 'required-for', 'context-dependent', 'no-effect'], 'type': 'string'}, 'entity': {'type': 'string', 'description': 'Entity on either end of the relation'}, 'offset': {'type': 'integer', 'default': 0, 'maximum': 9007199254740991, 'minimum': 0, 'description': 'For the next page: pass next_offset from the previous answer.'}, 'source': {'type': 'string'}, 'target': {'type': 'string'}, 'contested_only': {'type': 'boolean', 'description': 'Only relations marked contested or with conflicting studies'}, 'strongest_at_least': {'enum': ['S', 'H', 'A', 'M', 'R', 'PP', 'RT'], 'type': 'string', 'description': 'Keep relations whose best supporting study is at least this code in the order S > H > A > M'}}}
get_entity
Get one entity
One entity (gene/protein, complex, drug, disease, process...) with its linked studies as short cards (first studies_limit) and every pathway relation it takes part in as a one-line claim. Accepts an id, a name or a synonym.
읽기 전용 멱등성
입력 스키마 
{'type': 'object', '$schema': 'http://json-schema.org/draft-07/schema#', 'required': ['entity'], 'properties': {'entity': {'type': 'string', 'description': 'e.g. "mTORC1", "Rheb", "rapamycin"'}, 'studies_limit': {'type': 'integer', 'default': 25, 'maximum': 50, 'minimum': 0}}}
get_question
Get one question
One open or frontier question by ID (e.g. "H1", "F2"): the gap, what changed, what is still open, how it could be tested, linked studies.
읽기 전용 멱등성
입력 스키마 
{'type': 'object', '$schema': 'http://json-schema.org/draft-07/schema#', 'required': ['id'], 'properties': {'id': {'type': 'string'}}}
get_relation
Get one relation
One pathway relation by ID (e.g. "RHEB-MTORC1"): mechanism, boundary conditions, confidence, supporting and conflicting studies.
읽기 전용 멱등성
입력 스키마 
{'type': 'object', '$schema': 'http://json-schema.org/draft-07/schema#', 'required': ['id'], 'properties': {'id': {'type': 'string'}}}
get_study
Get one study
Full record for one study by Atlas ID (e.g. "SAB1994"): abstract excerpt, extracted findings, linked entities, the relations it supports or contradicts, related open questions.
읽기 전용 멱등성
입력 스키마 
{'type': 'object', '$schema': 'http://json-schema.org/draft-07/schema#', 'required': ['sid'], 'properties': {'sid': {'type': 'string', 'description': 'Atlas study ID, e.g. "SAB1994"'}}}
list_questions
List open questions
The Atlas's open questions (evidence gaps with testable hypotheses) and frontier questions.
읽기 전용 멱등성
입력 스키마 
{'type': 'object', '$schema': 'http://json-schema.org/draft-07/schema#', 'properties': {'kind': {'enum': ['open-question', 'frontier'], 'type': 'string'}}}
search_entities
Search entities
Find genes/proteins, complexes, drugs, diseases, processes, nutrients and outcomes by name or synonym.
읽기 전용 멱등성
입력 스키마 
{'type': 'object', '$schema': 'http://json-schema.org/draft-07/schema#', 'required': ['query'], 'properties': {'type': {'type': 'string', 'description': 'Optional type filter, e.g. "Drug", "Gene/Protein", "Disease"'}, 'limit': {'type': 'integer', 'default': 20, 'maximum': 100, 'minimum': 1}, 'query': {'type': 'string', 'description': 'Name or synonym, e.g. "raptor", "sirolimus"'}}}
search_studies
Search studies
Search the curated studies by keywords (title, finding, authors, journal, model system), optionally filtered by evidence code, a linked entity (gene, drug, disease...) and year range. Returns summary records with evidence codes and URLs.
읽기 전용 멱등성
입력 스키마 
{'type': 'object', '$schema': 'http://json-schema.org/draft-07/schema#', 'properties': {'limit': {'type': 'integer', 'default': 20, 'maximum': 50, 'minimum': 1}, 'query': {'type': 'string', 'description': 'Keywords, e.g. "rapamycin lifespan mice". Omit to list by filters only.'}, 'entity': {'type': 'string', 'description': 'Only studies linked to this entity (name, synonym or id), e.g. "Rheb".'}, 'offset': {'type': 'integer', 'default': 0, 'maximum': 9007199254740991, 'minimum': 0, 'description': 'For the next page: pass next_offset from the previous answer.'}, 'year_to': {'type': 'integer', 'maximum': 9007199254740991, 'minimum': -9007199254740991}, 'year_from': {'type': 'integer', 'maximum': 9007199254740991, 'minimum': -9007199254740991}, 'evidence_code': {'type': 'array', 'items': {'enum': ['S', 'H', 'A', 'M', 'R', 'PP', 'RT'], 'type': 'string'}, 'description': 'Keep only these evidence codes, e.g. ["H","S"] for human evidence.'}}}
기록

최근 도구 변경

추가됨
get_question
2026년 10월 2일 2:40 AM
추가됨
list_questions
2026년 10월 2일 2:40 AM
추가됨
find_contradictions
2026년 10월 2일 2:40 AM
추가됨
evidence_between
2026년 10월 2일 2:40 AM
추가됨
get_relation
2026년 10월 2일 2:40 AM
추가됨
find_relations
2026년 10월 2일 2:40 AM
추가됨
get_entity
2026년 10월 2일 2:40 AM
추가됨
search_entities
2026년 10월 2일 2:40 AM
추가됨
get_study
2026년 10월 2일 2:40 AM
추가됨
search_studies
2026년 10월 2일 2:40 AM
추가됨
atlas_about
2026년 10월 2일 2:40 AM
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