Noodle Biomedical Literature Discovery MCP

{'type': 'object', 'title': 'GetCorpusSummaryArguments', 'properties': {}, 'additionalProperties': False}

{'type': 'object', '$defs': {'PublicCorpusCounts': {'type': 'object', 'title': 'PublicCorpusCounts', 'required': ['source_records', 'unique_works', 'gene_mentions', 'variant_mentions', 'phenotype_mentions', 'evidence_links'], 'properties': {'unique_works': {'type': 'integer', 'title': 'Unique Works'}, 'gene_mentions': {'type': 'integer', 'title': 'Gene Mentions'}, 'evidence_links': {'type': 'integer', 'title': 'Evidence Links'}, 'source_records': {'type': 'integer', 'title': 'Source Records'}, 'variant_mentions': {'type': 'integer', 'title': 'Variant Mentions'}, 'phenotype_mentions': {'type': 'integer', 'title': 'Phenotype Mentions'}}, 'additionalProperties': False}, 'PublicCorpusSource': {'type': 'object', 'title': 'PublicCorpusSource', 'required': ['source_id', 'display_name', 'source_type', 'source_records', 'unique_works', 'evidence_links'], 'properties': {'source_id': {'type': 'string', 'title': 'Source Id'}, 'source_type': {'type': 'string', 'title': 'Source Type'}, 'display_name': {'type': 'string', 'title': 'Display Name'}, 'unique_works': {'type': 'integer', 'title': 'Unique Works'}, 'evidence_links': {'type': 'integer', 'title': 'Evidence Links'}, 'source_records': {'type': 'integer', 'title': 'Source Records'}}, 'additionalProperties': False}}, 'title': 'PublicCorpusSummaryResponse', 'required': ['contract_version', 'generated_at', 'counts', 'sources', 'deduplication_keys', 'scope'], 'properties': {'scope': {'type': 'string', 'title': 'Scope'}, 'counts': {'$ref': '#/$defs/PublicCorpusCounts'}, 'sources': {'type': 'array', 'items': {'$ref': '#/$defs/PublicCorpusSource'}, 'title': 'Sources'}, 'generated_at': {'type': 'string', 'title': 'Generated At'}, 'contract_version': {'type': 'string', 'const': '1.0', 'title': 'Contract Version'}, 'deduplication_keys': {'type': 'array', 'items': {'type': 'string'}, 'title': 'Deduplication Keys'}}, 'additionalProperties': False}

{'type': 'object', 'title': 'GetPublicationDetailsArguments', 'required': ['pmid'], 'properties': {'pmid': {'type': 'string', 'title': 'Pmid', 'pattern': '^[0-9]{1,12}$', 'description': "One PubMed identifier to look up in Noodle's current public corpus, as 1 to 12 digits without a PMID prefix."}}, 'additionalProperties': False}

{'type': 'object', '$defs': {'PublicGeneMention': {'type': 'object', 'title': 'PublicGeneMention', 'required': ['gene_symbol', 'association_type', 'mention_count'], 'properties': {'gene_symbol': {'type': 'string', 'title': 'Gene Symbol'}, 'mention_count': {'type': 'integer', 'title': 'Mention Count'}, 'association_type': {'anyOf': [{'type': 'string'}, {'type': 'null'}], 'title': 'Association Type'}}, 'additionalProperties': False}, 'PublicVariantMention': {'type': 'object', 'title': 'PublicVariantMention', 'required': ['gene_symbol', 'hgvs_cdna', 'hgvs_protein', 'normalized_variant', 'clinical_significance', 'evidence_type', 'sentence_text', 'confidence_score'], 'properties': {'hgvs_cdna': {'anyOf': [{'type': 'string'}, {'type': 'null'}], 'title': 'Hgvs Cdna'}, 'gene_symbol': {'anyOf': [{'type': 'string'}, {'type': 'null'}], 'title': 'Gene Symbol'}, 'hgvs_protein': {'anyOf': [{'type': 'string'}, {'type': 'null'}], 'title': 'Hgvs Protein'}, 'evidence_type': {'anyOf': [{'type': 'string'}, {'type': 'null'}], 'title': 'Evidence Type'}, 'sentence_text': {'anyOf': [{'type': 'string'}, {'type': 'null'}], 'title': 'Sentence Text'}, 'confidence_score': {'anyOf': [{'type': 'number'}, {'type': 'null'}], 'title': 'Confidence Score'}, 'normalized_variant': {'anyOf': [{'type': 'string'}, {'type': 'null'}], 'title': 'Normalized Variant'}, 'clinical_significance': {'anyOf': [{'type': 'string'}, {'type': 'null'}], 'title': 'Clinical Significance'}}, 'additionalProperties': False}, 'PublicPublicationDetails': {'type': 'object', 'title': 'PublicPublicationDetails', 'required': ['pmid', 'title', 'abstract', 'authors', 'journal', 'publication_date', 'publication_types', 'mesh_terms', 'doi', 'pmc_id', 'is_retracted', 'pubmed_url', 'full_text_url', 'gene_mentions', 'variant_mentions'], 'properties': {'doi': {'anyOf': [{'type': 'string'}, {'type': 'null'}], 'title': 'Doi'}, 'pmid': {'type': 'string', 'title': 'Pmid', 'pattern': '^[0-9]{1,12}$'}, 'title': {'type': 'string', 'title': 'Title'}, 'pmc_id': {'anyOf': [{'type': 'string'}, {'type': 'null'}], 'title': 'Pmc Id'}, 'authors': {'type': 'array', 'items': {'type': 'string'}, 'title': 'Authors'}, 'journal': {'anyOf': [{'type': 'string'}, {'type': 'null'}], 'title': 'Journal'}, 'abstract': {'anyOf': [{'type': 'string'}, {'type': 'null'}], 'title': 'Abstract'}, 'mesh_terms': {'type': 'array', 'items': {'type': 'string'}, 'title': 'Mesh Terms'}, 'pubmed_url': {'type': 'string', 'title': 'Pubmed Url'}, 'is_retracted': {'type': 'boolean', 'title': 'Is Retracted'}, 'full_text_url': {'anyOf': [{'type': 'string'}, {'type': 'null'}], 'title': 'Full Text Url'}, 'gene_mentions': {'type': 'array', 'items': {'$ref': '#/$defs/PublicGeneMention'}, 'title': 'Gene Mentions'}, 'publication_date': {'anyOf': [{'type': 'string'}, {'type': 'null'}], 'title': 'Publication Date'}, 'variant_mentions': {'type': 'array', 'items': {'$ref': '#/$defs/PublicVariantMention'}, 'title': 'Variant Mentions'}, 'publication_types': {'type': 'array', 'items': {'type': 'string'}, 'title': 'Publication Types'}}, 'additionalProperties': False}}, 'title': 'PublicationDetailsResponse', 'required': ['contract_version', 'publication', 'usage_boundary'], 'properties': {'publication': {'$ref': '#/$defs/PublicPublicationDetails'}, 'usage_boundary': {'type': 'object', 'title': 'Usage Boundary', 'additionalProperties': True}, 'contract_version': {'type': 'string', 'const': '1.0', 'title': 'Contract Version'}}, 'additionalProperties': False}

{'type': 'object', 'title': 'GetPublicationNeighborhoodArguments', 'required': ['pmid'], 'properties': {'pmid': {'type': 'string', 'title': 'Pmid', 'pattern': '^[0-9]{1,12}$', 'description': 'One PubMed identifier, as 1 to 12 digits.'}, 'from_work_id': {'anyOf': [{'type': 'string', 'pattern': '^[A-Za-z0-9][A-Za-z0-9._:-]{0,127}$'}, {'type': 'null'}], 'title': 'From Work Id', 'default': None, 'description': 'Optional prior work ID for a reversible graph path.'}}, 'additionalProperties': False}

{'type': 'object', '$defs': {'ArticleNeighborhoodEdge': {'type': 'object', 'title': 'ArticleNeighborhoodEdge', 'required': ['id', 'source_id', 'target_id', 'reasons'], 'properties': {'id': {'type': 'string', 'title': 'Id', 'pattern': '^[A-Za-z0-9][A-Za-z0-9:._/-]{0,159}$'}, 'reasons': {'type': 'array', 'items': {'$ref': '#/$defs/ArticleNeighborhoodReason'}, 'title': 'Reasons', 'maxItems': 7, 'minItems': 1}, 'source_id': {'type': 'string', 'title': 'Source Id', 'pattern': '^[A-Za-z0-9][A-Za-z0-9:._/-]{0,159}$'}, 'target_id': {'type': 'string', 'title': 'Target Id', 'pattern': '^[A-Za-z0-9][A-Za-z0-9:._/-]{0,159}$'}}, 'additionalProperties': False}, 'ArticleNeighborhoodNode': {'type': 'object', 'title': 'ArticleNeighborhoodNode', 'required': ['id', 'kind', 'label', 'canonical_path'], 'properties': {'id': {'type': 'string', 'title': 'Id', 'pattern': '^[A-Za-z0-9][A-Za-z0-9:._/-]{0,159}$'}, 'kind': {'enum': ['publication', 'gene', 'variant', 'phenotype', 'disease'], 'type': 'string', 'title': 'Kind'}, 'label': {'type': 'string', 'title': 'Label', 'maxLength': 500, 'minLength': 1}, 'canonical_path': {'type': 'string', 'title': 'Canonical Path', 'pattern': '^/[A-Za-z0-9._~/-]{1,300}$'}, 'publication_doi': {'anyOf': [{'type': 'string', 'maxLength': 255, 'minLength': 3}, {'type': 'null'}], 'title': 'Publication Doi', 'default': None}, 'publication_pmid': {'anyOf': [{'type': 'string', 'pattern': '^[0-9]{1,12}$'}, {'type': 'null'}], 'title': 'Publication Pmid', 'default': None}, 'publication_pmcid': {'anyOf': [{'type': 'string', 'pattern': '^PMC[0-9]+$'}, {'type': 'null'}], 'title': 'Publication Pmcid', 'default': None}, 'publication_work_id': {'anyOf': [{'type': 'string', 'pattern': '^[A-Za-z0-9][A-Za-z0-9._:-]{0,127}$'}, {'type': 'null'}], 'title': 'Publication Work Id', 'default': None}}, 'additionalProperties': False}, 'ArticleNeighborhoodReason': {'type': 'object', 'title': 'ArticleNeighborhoodReason', 'required': ['kind', 'label', 'score', 'model_version', 'provenance'], 'properties': {'kind': {'enum': ['shared_gene', 'shared_variant', 'shared_phenotype', 'shared_disease', 'cites', 'cited_by', 'semantic_relatedness'], 'type': 'string', 'title': 'Kind'}, 'label': {'type': 'string', 'title': 'Label', 'maxLength': 500, 'minLength': 1}, 'score': {'anyOf': [{'type': 'number'}, {'type': 'null'}], 'title': 'Score'}, 'provenance': {'$ref': '#/$defs/ArticleNeighborhoodProvenance'}, 'model_version': {'anyOf': [{'type': 'string', 'pattern': '^[A-Za-z0-9][A-Za-z0-9._:-]{0,127}$'}, {'type': 'null'}], 'title': 'Model Version'}}, 'additionalProperties': False}, 'ArticleNeighborhoodProvenance': {'type': 'object', 'title': 'ArticleNeighborhoodProvenance', 'required': ['source', 'record_id', 'canonical_url', 'retrieved_at'], 'properties': {'source': {'type': 'string', 'title': 'Source', 'maxLength': 160, 'minLength': 1}, 'record_id': {'type': 'string', 'title': 'Record Id', 'pattern': '^[A-Za-z0-9][A-Za-z0-9:._/-]{0,159}$'}, 'retrieved_at': {'type': 'string', 'title': 'Retrieved At', 'pattern': '^[0-9]{4}-[0-9]{2}-[0-9]{2}T[0-9]{2}:[0-9]{2}:[0-9]{2}\\.[0-9]{3}Z$'}, 'canonical_url': {'anyOf': [{'type': 'string', 'maxLength': 2048}, {'type': 'null'}], 'title': 'Canonical Url'}}, 'additionalProperties': False}, 'ArticleNeighborhoodUsageBoundary': {'type': 'object', 'title': 'ArticleNeighborhoodUsageBoundary', 'required': ['review_required', 'patient_context_evaluated', 'semantic_similarity_is_evidence'], 'properties': {'review_required': {'type': 'boolean', 'const': True, 'title': 'Review Required'}, 'patient_context_evaluated': {'type': 'boolean', 'const': False, 'title': 'Patient Context Evaluated'}, 'semantic_similarity_is_evidence': {'type': 'boolean', 'const': False, 'title': 'Semantic Similarity Is Evidence'}}, 'additionalProperties': False}}, 'title': 'ArticleNeighborhoodResponse', 'required': ['contract_version', 'anchor_node_id', 'graph_version', 'release_channel', 'policy_version', 'generated_at', 'stale_after', 'freshness', 'nodes', 'edges', 'usage_boundary'], 'properties': {'edges': {'type': 'array', 'items': {'$ref': '#/$defs/ArticleNeighborhoodEdge'}, 'title': 'Edges', 'maxItems': 64, 'minItems': 8}, 'nodes': {'type': 'array', 'items': {'$ref': '#/$defs/ArticleNeighborhoodNode'}, 'title': 'Nodes', 'maxItems': 25, 'minItems': 9}, 'freshness': {'type': 'string', 'const': 'CURRENT', 'title': 'Freshness'}, 'anchor_pmid': {'anyOf': [{'type': 'string', 'pattern': '^[0-9]{1,12}$'}, {'type': 'null'}], 'title': 'Anchor Pmid', 'default': None}, 'stale_after': {'type': 'string', 'title': 'Stale After', 'pattern': '^[0-9]{4}-[0-9]{2}-[0-9]{2}T[0-9]{2}:[0-9]{2}:[0-9]{2}\\.[0-9]{3}Z$'}, 'generated_at': {'type': 'string', 'title': 'Generated At', 'pattern': '^[0-9]{4}-[0-9]{2}-[0-9]{2}T[0-9]{2}:[0-9]{2}:[0-9]{2}\\.[0-9]{3}Z$'}, 'graph_version': {'type': 'string', 'title': 'Graph Version', 'pattern': '^[A-Za-z0-9][A-Za-z0-9._:-]{0,127}$'}, 'anchor_node_id': {'type': 'string', 'title': 'Anchor Node Id', 'pattern': '^[A-Za-z0-9][A-Za-z0-9:._/-]{0,159}$'}, 'anchor_work_id': {'anyOf': [{'type': 'string', 'pattern': '^[A-Za-z0-9][A-Za-z0-9._:-]{0,127}$'}, {'type': 'null'}], 'title': 'Anchor Work Id', 'default': None}, 'policy_version': {'type': 'string', 'title': 'Policy Version', 'pattern': '^[A-Za-z0-9][A-Za-z0-9._:-]{0,127}$'}, 'usage_boundary': {'$ref': '#/$defs/ArticleNeighborhoodUsageBoundary'}, 'release_channel': {'type': 'string', 'title': 'Release Channel', 'pattern': '^[A-Za-z0-9][A-Za-z0-9._:-]{0,127}$'}, 'contract_version': {'enum': ['0.1', '0.2'], 'type': 'string', 'title': 'Contract Version'}}, 'additionalProperties': False}

{'type': 'object', 'title': 'GetWorkDetailsArguments', 'required': ['work_id'], 'properties': {'work_id': {'type': 'string', 'title': 'Work Id', 'pattern': '^[A-Za-z0-9][A-Za-z0-9._:-]{0,127}$', 'description': 'Canonical Noodle Literature Corpus work identifier.'}}, 'additionalProperties': False}

{'type': 'object', '$defs': {'PublicGeneMention': {'type': 'object', 'title': 'PublicGeneMention', 'required': ['gene_symbol', 'association_type', 'mention_count'], 'properties': {'gene_symbol': {'type': 'string', 'title': 'Gene Symbol'}, 'mention_count': {'type': 'integer', 'title': 'Mention Count'}, 'association_type': {'anyOf': [{'type': 'string'}, {'type': 'null'}], 'title': 'Association Type'}}, 'additionalProperties': False}, 'PublicWorkDetails': {'type': 'object', 'title': 'PublicWorkDetails', 'required': ['work_id', 'title', 'abstract', 'authors', 'journal', 'publication_date', 'publication_types', 'mesh_terms', 'doi', 'pmc_id', 'is_retracted', 'pubmed_url', 'doi_url', 'full_text_url', 'gene_mentions', 'variant_mentions'], 'properties': {'doi': {'anyOf': [{'type': 'string'}, {'type': 'null'}], 'title': 'Doi'}, 'pmid': {'anyOf': [{'type': 'string', 'pattern': '^[0-9]{1,12}$'}, {'type': 'null'}], 'title': 'Pmid', 'default': None}, 'title': {'type': 'string', 'title': 'Title'}, 'pmc_id': {'anyOf': [{'type': 'string'}, {'type': 'null'}], 'title': 'Pmc Id'}, 'authors': {'type': 'array', 'items': {'type': 'string'}, 'title': 'Authors'}, 'doi_url': {'anyOf': [{'type': 'string'}, {'type': 'null'}], 'title': 'Doi Url'}, 'journal': {'anyOf': [{'type': 'string'}, {'type': 'null'}], 'title': 'Journal'}, 'work_id': {'type': 'string', 'title': 'Work Id', 'pattern': '^[A-Za-z0-9][A-Za-z0-9._:-]{0,127}$'}, 'abstract': {'anyOf': [{'type': 'string'}, {'type': 'null'}], 'title': 'Abstract'}, 'mesh_terms': {'type': 'array', 'items': {'type': 'string'}, 'title': 'Mesh Terms'}, 'pubmed_url': {'anyOf': [{'type': 'string'}, {'type': 'null'}], 'title': 'Pubmed Url'}, 'is_retracted': {'type': 'boolean', 'title': 'Is Retracted'}, 'full_text_url': {'anyOf': [{'type': 'string'}, {'type': 'null'}], 'title': 'Full Text Url'}, 'gene_mentions': {'type': 'array', 'items': {'$ref': '#/$defs/PublicGeneMention'}, 'title': 'Gene Mentions'}, 'publication_date': {'anyOf': [{'type': 'string'}, {'type': 'null'}], 'title': 'Publication Date'}, 'variant_mentions': {'type': 'array', 'items': {'$ref': '#/$defs/PublicVariantMention'}, 'title': 'Variant Mentions'}, 'publication_types': {'type': 'array', 'items': {'type': 'string'}, 'title': 'Publication Types'}}, 'additionalProperties': False}, 'PublicVariantMention': {'type': 'object', 'title': 'PublicVariantMention', 'required': ['gene_symbol', 'hgvs_cdna', 'hgvs_protein', 'normalized_variant', 'clinical_significance', 'evidence_type', 'sentence_text', 'confidence_score'], 'properties': {'hgvs_cdna': {'anyOf': [{'type': 'string'}, {'type': 'null'}], 'title': 'Hgvs Cdna'}, 'gene_symbol': {'anyOf': [{'type': 'string'}, {'type': 'null'}], 'title': 'Gene Symbol'}, 'hgvs_protein': {'anyOf': [{'type': 'string'}, {'type': 'null'}], 'title': 'Hgvs Protein'}, 'evidence_type': {'anyOf': [{'type': 'string'}, {'type': 'null'}], 'title': 'Evidence Type'}, 'sentence_text': {'anyOf': [{'type': 'string'}, {'type': 'null'}], 'title': 'Sentence Text'}, 'confidence_score': {'anyOf': [{'type': 'number'}, {'type': 'null'}], 'title': 'Confidence Score'}, 'normalized_variant': {'anyOf': [{'type': 'string'}, {'type': 'null'}], 'title': 'Normalized Variant'}, 'clinical_significance': {'anyOf': [{'type': 'string'}, {'type': 'null'}], 'title': 'Clinical Significance'}}, 'additionalProperties': False}}, 'title': 'WorkDetailsResponse', 'required': ['contract_version', 'publication', 'usage_boundary'], 'properties': {'publication': {'$ref': '#/$defs/PublicWorkDetails'}, 'usage_boundary': {'type': 'object', 'title': 'Usage Boundary', 'additionalProperties': True}, 'contract_version': {'type': 'string', 'const': '1.0', 'title': 'Contract Version'}}, 'additionalProperties': False}

{'type': 'object', 'title': 'GetWorkNeighborhoodArguments', 'required': ['work_id'], 'properties': {'work_id': {'type': 'string', 'title': 'Work Id', 'pattern': '^[A-Za-z0-9][A-Za-z0-9._:-]{0,127}$', 'description': 'Canonical work identifier to place at the graph center.'}, 'from_work_id': {'anyOf': [{'type': 'string', 'pattern': '^[A-Za-z0-9][A-Za-z0-9._:-]{0,127}$'}, {'type': 'null'}], 'title': 'From Work Id', 'default': None, 'description': 'Optional prior work ID for a reversible graph path.'}}, 'additionalProperties': False}

{'type': 'object', '$defs': {'ArticleNeighborhoodEdge': {'type': 'object', 'title': 'ArticleNeighborhoodEdge', 'required': ['id', 'source_id', 'target_id', 'reasons'], 'properties': {'id': {'type': 'string', 'title': 'Id', 'pattern': '^[A-Za-z0-9][A-Za-z0-9:._/-]{0,159}$'}, 'reasons': {'type': 'array', 'items': {'$ref': '#/$defs/ArticleNeighborhoodReason'}, 'title': 'Reasons', 'maxItems': 7, 'minItems': 1}, 'source_id': {'type': 'string', 'title': 'Source Id', 'pattern': '^[A-Za-z0-9][A-Za-z0-9:._/-]{0,159}$'}, 'target_id': {'type': 'string', 'title': 'Target Id', 'pattern': '^[A-Za-z0-9][A-Za-z0-9:._/-]{0,159}$'}}, 'additionalProperties': False}, 'ArticleNeighborhoodNode': {'type': 'object', 'title': 'ArticleNeighborhoodNode', 'required': ['id', 'kind', 'label', 'canonical_path'], 'properties': {'id': {'type': 'string', 'title': 'Id', 'pattern': '^[A-Za-z0-9][A-Za-z0-9:._/-]{0,159}$'}, 'kind': {'enum': ['publication', 'gene', 'variant', 'phenotype', 'disease'], 'type': 'string', 'title': 'Kind'}, 'label': {'type': 'string', 'title': 'Label', 'maxLength': 500, 'minLength': 1}, 'canonical_path': {'type': 'string', 'title': 'Canonical Path', 'pattern': '^/[A-Za-z0-9._~/-]{1,300}$'}, 'publication_doi': {'anyOf': [{'type': 'string', 'maxLength': 255, 'minLength': 3}, {'type': 'null'}], 'title': 'Publication Doi', 'default': None}, 'publication_pmid': {'anyOf': [{'type': 'string', 'pattern': '^[0-9]{1,12}$'}, {'type': 'null'}], 'title': 'Publication Pmid', 'default': None}, 'publication_pmcid': {'anyOf': [{'type': 'string', 'pattern': '^PMC[0-9]+$'}, {'type': 'null'}], 'title': 'Publication Pmcid', 'default': None}, 'publication_work_id': {'anyOf': [{'type': 'string', 'pattern': '^[A-Za-z0-9][A-Za-z0-9._:-]{0,127}$'}, {'type': 'null'}], 'title': 'Publication Work Id', 'default': None}}, 'additionalProperties': False}, 'ArticleNeighborhoodReason': {'type': 'object', 'title': 'ArticleNeighborhoodReason', 'required': ['kind', 'label', 'score', 'model_version', 'provenance'], 'properties': {'kind': {'enum': ['shared_gene', 'shared_variant', 'shared_phenotype', 'shared_disease', 'cites', 'cited_by', 'semantic_relatedness'], 'type': 'string', 'title': 'Kind'}, 'label': {'type': 'string', 'title': 'Label', 'maxLength': 500, 'minLength': 1}, 'score': {'anyOf': [{'type': 'number'}, {'type': 'null'}], 'title': 'Score'}, 'provenance': {'$ref': '#/$defs/ArticleNeighborhoodProvenance'}, 'model_version': {'anyOf': [{'type': 'string', 'pattern': '^[A-Za-z0-9][A-Za-z0-9._:-]{0,127}$'}, {'type': 'null'}], 'title': 'Model Version'}}, 'additionalProperties': False}, 'ArticleNeighborhoodProvenance': {'type': 'object', 'title': 'ArticleNeighborhoodProvenance', 'required': ['source', 'record_id', 'canonical_url', 'retrieved_at'], 'properties': {'source': {'type': 'string', 'title': 'Source', 'maxLength': 160, 'minLength': 1}, 'record_id': {'type': 'string', 'title': 'Record Id', 'pattern': '^[A-Za-z0-9][A-Za-z0-9:._/-]{0,159}$'}, 'retrieved_at': {'type': 'string', 'title': 'Retrieved At', 'pattern': '^[0-9]{4}-[0-9]{2}-[0-9]{2}T[0-9]{2}:[0-9]{2}:[0-9]{2}\\.[0-9]{3}Z$'}, 'canonical_url': {'anyOf': [{'type': 'string', 'maxLength': 2048}, {'type': 'null'}], 'title': 'Canonical Url'}}, 'additionalProperties': False}, 'ArticleNeighborhoodUsageBoundary': {'type': 'object', 'title': 'ArticleNeighborhoodUsageBoundary', 'required': ['review_required', 'patient_context_evaluated', 'semantic_similarity_is_evidence'], 'properties': {'review_required': {'type': 'boolean', 'const': True, 'title': 'Review Required'}, 'patient_context_evaluated': {'type': 'boolean', 'const': False, 'title': 'Patient Context Evaluated'}, 'semantic_similarity_is_evidence': {'type': 'boolean', 'const': False, 'title': 'Semantic Similarity Is Evidence'}}, 'additionalProperties': False}}, 'title': 'ArticleNeighborhoodResponse', 'required': ['contract_version', 'anchor_node_id', 'graph_version', 'release_channel', 'policy_version', 'generated_at', 'stale_after', 'freshness', 'nodes', 'edges', 'usage_boundary'], 'properties': {'edges': {'type': 'array', 'items': {'$ref': '#/$defs/ArticleNeighborhoodEdge'}, 'title': 'Edges', 'maxItems': 64, 'minItems': 8}, 'nodes': {'type': 'array', 'items': {'$ref': '#/$defs/ArticleNeighborhoodNode'}, 'title': 'Nodes', 'maxItems': 25, 'minItems': 9}, 'freshness': {'type': 'string', 'const': 'CURRENT', 'title': 'Freshness'}, 'anchor_pmid': {'anyOf': [{'type': 'string', 'pattern': '^[0-9]{1,12}$'}, {'type': 'null'}], 'title': 'Anchor Pmid', 'default': None}, 'stale_after': {'type': 'string', 'title': 'Stale After', 'pattern': '^[0-9]{4}-[0-9]{2}-[0-9]{2}T[0-9]{2}:[0-9]{2}:[0-9]{2}\\.[0-9]{3}Z$'}, 'generated_at': {'type': 'string', 'title': 'Generated At', 'pattern': '^[0-9]{4}-[0-9]{2}-[0-9]{2}T[0-9]{2}:[0-9]{2}:[0-9]{2}\\.[0-9]{3}Z$'}, 'graph_version': {'type': 'string', 'title': 'Graph Version', 'pattern': '^[A-Za-z0-9][A-Za-z0-9._:-]{0,127}$'}, 'anchor_node_id': {'type': 'string', 'title': 'Anchor Node Id', 'pattern': '^[A-Za-z0-9][A-Za-z0-9:._/-]{0,159}$'}, 'anchor_work_id': {'anyOf': [{'type': 'string', 'pattern': '^[A-Za-z0-9][A-Za-z0-9._:-]{0,127}$'}, {'type': 'null'}], 'title': 'Anchor Work Id', 'default': None}, 'policy_version': {'type': 'string', 'title': 'Policy Version', 'pattern': '^[A-Za-z0-9][A-Za-z0-9._:-]{0,127}$'}, 'usage_boundary': {'$ref': '#/$defs/ArticleNeighborhoodUsageBoundary'}, 'release_channel': {'type': 'string', 'title': 'Release Channel', 'pattern': '^[A-Za-z0-9][A-Za-z0-9._:-]{0,127}$'}, 'contract_version': {'enum': ['0.1', '0.2'], 'type': 'string', 'title': 'Contract Version'}}, 'additionalProperties': False}

{'type': 'object', 'title': 'SearchCorpusArguments', 'required': ['query'], 'properties': {'sort': {'enum': ['relevance', 'newest', 'oldest'], 'type': 'string', 'title': 'Sort', 'default': 'relevance', 'description': 'Result ordering: relevance-ranked, newest publication first, or oldest publication first.'}, 'limit': {'type': 'integer', 'title': 'Limit', 'default': 20, 'maximum': 25, 'minimum': 1, 'description': 'Maximum number of publications to return, from 1 to 25.'}, 'query': {'type': 'string', 'title': 'Query', 'maxLength': 200, 'minLength': 3, 'description': 'Natural-language literature question or exact PMID, DOI, PMCID, gene, variant, phenotype, HPO, or OMIM query. Include every known publication identifier when comparing or finding related papers.'}, 'cursor': {'anyOf': [{'type': 'string', 'pattern': '^[A-Za-z0-9_-]+$', 'maxLength': 128, 'minLength': 8}, {'type': 'null'}], 'title': 'Cursor', 'default': None, 'description': 'Opaque continuation cursor from the preceding response for the same query and sort order; omit for the first page.'}}, 'additionalProperties': False}

{'type': 'object', '$defs': {'PublicCorpusSearchResult': {'type': 'object', 'title': 'PublicCorpusSearchResult', 'required': ['work_id', 'pmid', 'title', 'abstract_excerpt', 'journal', 'publication_date', 'doi', 'pmc_id', 'source_url', 'pubmed_url', 'match_types', 'structured_score'], 'properties': {'doi': {'anyOf': [{'type': 'string'}, {'type': 'null'}], 'title': 'Doi'}, 'pmid': {'anyOf': [{'type': 'string', 'pattern': '^[0-9]{1,12}$'}, {'type': 'null'}], 'title': 'Pmid'}, 'title': {'type': 'string', 'title': 'Title'}, 'pmc_id': {'anyOf': [{'type': 'string'}, {'type': 'null'}], 'title': 'Pmc Id'}, 'authors': {'type': 'array', 'items': {'type': 'string'}, 'title': 'Authors'}, 'journal': {'anyOf': [{'type': 'string'}, {'type': 'null'}], 'title': 'Journal'}, 'work_id': {'type': 'string', 'title': 'Work Id'}, 'pubmed_url': {'anyOf': [{'type': 'string'}, {'type': 'null'}], 'title': 'Pubmed Url'}, 'rank_score': {'type': 'number', 'title': 'Rank Score', 'default': 0.0}, 'source_url': {'type': 'string', 'title': 'Source Url'}, 'graph_score': {'anyOf': [{'type': 'number'}, {'type': 'null'}], 'title': 'Graph Score', 'default': None}, 'match_types': {'type': 'array', 'items': {'enum': ['pmid', 'doi', 'pmcid', 'title', 'abstract', 'gene', 'variant', 'phenotype', 'hpo', 'omim', 'semantic', 'graph'], 'type': 'string'}, 'title': 'Match Types'}, 'semantic_score': {'anyOf': [{'type': 'number'}, {'type': 'null'}], 'title': 'Semantic Score', 'default': None}, 'abstract_excerpt': {'type': 'string', 'title': 'Abstract Excerpt'}, 'article_entities': {'type': 'array', 'items': {'$ref': '#/$defs/PublicCorpusArticleEntity'}, 'title': 'Article Entities'}, 'publication_date': {'anyOf': [{'type': 'string'}, {'type': 'null'}], 'title': 'Publication Date'}, 'structured_score': {'type': 'number', 'title': 'Structured Score'}, 'graph_anchor_pmid': {'anyOf': [{'type': 'string'}, {'type': 'null'}], 'title': 'Graph Anchor Pmid', 'default': None}}, 'additionalProperties': False}, 'PublicCorpusArticleEntity': {'type': 'object', 'title': 'PublicCorpusArticleEntity', 'required': ['entity_type', 'identifier', 'label', 'source_field', 'normalization_state'], 'properties': {'label': {'type': 'string', 'title': 'Label'}, 'identifier': {'anyOf': [{'type': 'string'}, {'type': 'null'}], 'title': 'Identifier'}, 'entity_type': {'enum': ['gene', 'variant', 'phenotype', 'pmid', 'doi', 'pmcid', 'omim'], 'type': 'string', 'title': 'Entity Type'}, 'source_field': {'enum': ['work_identifiers.normalized_value', 'gene_mentions.gene_symbol', 'variant_mentions.normalized_variant', 'phenotype_mentions.hpo_id', 'phenotype_mentions.omim_id', 'phenotype_mentions.mesh_term', 'phenotype_mentions.phenotype_name'], 'type': 'string', 'title': 'Source Field'}, 'normalization_state': {'enum': ['normalized', 'source_indexed'], 'type': 'string', 'title': 'Normalization State'}}, 'additionalProperties': False}}, 'title': 'PublicCorpusSearchResponse', 'required': ['contract_version', 'query', 'returned_count', 'results', 'searchable_fields', 'usage_boundary'], 'properties': {'query': {'type': 'string', 'title': 'Query'}, 'results': {'type': 'array', 'items': {'$ref': '#/$defs/PublicCorpusSearchResult'}, 'title': 'Results'}, 'has_more': {'type': 'boolean', 'title': 'Has More', 'default': False}, 'graph_used': {'type': 'boolean', 'title': 'Graph Used', 'default': False}, 'next_cursor': {'anyOf': [{'type': 'string'}, {'type': 'null'}], 'title': 'Next Cursor', 'default': None}, 'graph_version': {'anyOf': [{'type': 'string'}, {'type': 'null'}], 'title': 'Graph Version', 'default': None}, 'returned_count': {'type': 'integer', 'title': 'Returned Count'}, 'usage_boundary': {'type': 'object', 'title': 'Usage Boundary', 'additionalProperties': True}, 'contract_version': {'type': 'string', 'const': '1.0', 'title': 'Contract Version'}, 'searchable_fields': {'type': 'array', 'items': {'type': 'string'}, 'title': 'Searchable Fields'}, 'semantic_index_used': {'type': 'boolean', 'title': 'Semantic Index Used', 'default': False}, 'graph_degraded_reason': {'anyOf': [{'type': 'string'}, {'type': 'null'}], 'title': 'Graph Degraded Reason', 'default': None}, 'semantic_degraded_reason': {'anyOf': [{'type': 'string'}, {'type': 'null'}], 'title': 'Semantic Degraded Reason', 'default': None}}, 'additionalProperties': False}

{'type': 'object', 'properties': {}, 'additionalProperties': False}

{'type': 'object', 'additionalProperties': True}