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Ranomics Platform

com.ranomics/mcp
科学・工学 公開・接続可能 MCP 2025-11-25

このMCPでできること

Submits and tracks wet-lab binder-design experiments using yeast display, mammalian display, and deep mutational scanning workflows.

機能

ツール

7 ツール
confirm_quote
Accept a quote. Moves the experiment from QuoteSent to WaitingForMaterials. Call after a human (or budget guard) has approved the total_usd from get_experiment_quote. Returns 409 quote_not_confirmable if status is not QuoteSent, or 409 quote_not_finalized if a price has not been posted yet (total_usd null). Fetch get_experiment_quote and wait for total_usd before confirming.
入力スキーマ 
{'type': 'object', 'required': ['quote_id'], 'properties': {'quote_id': {'type': 'string', 'minLength': 1}}}
estimate_cost
Non-binding USD cost estimate for a hypothetical submission. Pass target_kind='catalog' + target_id for a calibrated band (requires_human_quote=false), or target_kind='custom' for a placeholder order-of-magnitude band (requires_human_quote=true). Call BEFORE submit_experiment when budgeting matters.
入力スキーマ 
{'type': 'object', 'required': ['experiment_type'], 'properties': {'target_id': {'type': 'string'}, 'target_kind': {'enum': ['catalog', 'custom'], 'type': 'string'}, 'candidate_count': {'type': 'integer', 'minimum': 0}, 'experiment_type': {'enum': ['yeast_display', 'mammalian_display', 'dms'], 'type': 'string'}, 'library_diversity': {'type': 'integer', 'minimum': 0}}}
get_experiment_quote
Fetch the quote for an experiment once status is QuoteSent. Returns quote_id, total_usd, currency (default USD), line_items, valid_until, and terms_url. If status is QuoteSent but the scoping team has not posted a price yet, total_usd is null and a 'note' field explains it is being finalised; poll again until total_usd populates. Pass the quote_id to confirm_quote to accept.
入力スキーマ 
{'type': 'object', 'required': ['experiment_id'], 'properties': {'experiment_id': {'type': 'string', 'minLength': 1}}}
get_experiment_results
Fetch results once results_status is 'partial' or 'all' (check via get_experiment_status first). Returns per-sequence pre/post counts, log2_enrichment, percentile, called_hit booleans, plus signed download URLs for the enrichment table CSV, hits FASTA, and (when opted in) raw FASTQ. Yeast-display result shape; mammalian and DMS use the same envelope.
入力スキーマ 
{'type': 'object', 'required': ['experiment_id'], 'properties': {'experiment_id': {'type': 'string', 'minLength': 1}}}
get_experiment_status
Poll an experiment by id. Returns the current status (Draft/WaitingForConfirmation/QuoteSent/WaitingForMaterials/LibraryConstruction/Sorting/NGS/DataAnalysis/InReview/Done), the orthogonal results_status (none/partial/all), and the status_log. Cheap; safe to poll every few minutes. Webhooks are preferred for production agents.
入力スキーマ 
{'type': 'object', 'required': ['experiment_id'], 'properties': {'experiment_id': {'type': 'string', 'minLength': 1}}}
list_targets
List the calibrated antigen catalogue. Each entry carries target_id, supported_experiment_types, and typical_campaign_range_usd. Use the target_id on submit_experiment to skip human scoping, or use the custom target shape for a one-off antigen.
入力スキーマ 
{'type': 'object', 'properties': {}}
submit_experiment
Submit a binder panel for wet-lab triage. The experiment_spec mirrors the curl /api/v1/experiments contract: experiment_type (yeast_display/mammalian_display/dms), target (target_id or custom), library_design, and sequences as {user_key: amino_acid_string} (use ':' as a multi-chain separator). Optional webhook_url receives signed POSTs on every status transition. Optional idempotency_key dedupes retries. Returns the created experiment with status WaitingForConfirmation and a status_log. Poll get_experiment_status to track progress, get_experiment_results when status_log shows Done.
入力スキーマ 
{'type': 'object', 'required': ['experiment_spec'], 'properties': {'name': {'type': 'string'}, 'webhook_url': {'type': 'string', 'format': 'uri'}, 'experiment_spec': {'type': 'object', 'required': ['experiment_type', 'target', 'sequences'], 'properties': {'target': {'type': 'object', 'properties': {'custom': {'type': 'object', 'required': ['name'], 'properties': {'name': {'type': 'string', 'minLength': 1}, 'notes': {'type': 'string'}, 'antigen_sequence': {'type': 'string'}}}, 'target_id': {'type': 'string', 'minLength': 1}}}, 'sequences': {'type': 'object', 'additionalProperties': {'type': 'string', 'minLength': 1}}, 'library_design': {'type': 'object', 'properties': {'mode': {'type': 'string'}, 'notes': {'type': 'string'}, 'diversity_estimate': {'type': 'integer', 'minimum': 0}}}, 'experiment_type': {'enum': ['yeast_display', 'mammalian_display', 'dms'], 'type': 'string'}}}, 'idempotency_key': {'type': 'string', 'maxLength': 128, 'minLength': 8}}}
履歴

最近のツール変更

追加
get_experiment_results
2026年9月17日12:37
追加
confirm_quote
2026年9月17日12:37
追加
get_experiment_quote
2026年9月17日12:37
追加
get_experiment_status
2026年9月17日12:37
追加
submit_experiment
2026年9月17日12:37
追加
estimate_cost
2026年9月17日12:37
追加
list_targets
2026年9月17日12:37
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